From d36b59581c6c4cb54bfe0e0fef2db869b7a3e759 Mon Sep 17 00:00:00 2001
From: Teo Camarasu <teofilcamarasu@gmail.com>
Date: Fri, 26 May 2023 18:11:13 +0100
Subject: [PATCH] Avoid calling in bash scripts
This seems to be a Makefile-ism that has been copied over into bash scripts, but this just causes an error in bash.
Resolves #30
---
shootout/fasta/boot.sh | 4 ++--
shootout/k-nucleotide/boot.sh | 4 ++--
shootout/reverse-complement/boot.sh | 2 +-
spectral/awards/boot.sh | 2 +-
spectral/banner/boot.sh | 2 +-
5 files changed, 7 insertions(+), 7 deletions(-)
diff --git a/shootout/fasta/boot.sh b/shootout/fasta/boot.sh
index b723c7f6..1e467575 100755
--- a/shootout/fasta/boot.sh
+++ b/shootout/fasta/boot.sh
@@ -13,7 +13,7 @@ HC=${3:-ghc}
mode=${4:-norm}
EXE=""
-if [[ $(shell uname -s | grep -c 'MSYS\|MINGW') -eq 1 ]]
+if [[ $(uname -s | grep -c 'MSYS\|MINGW') -eq 1 ]]
then
EXE=".exe"
fi
@@ -46,4 +46,4 @@ ${output}/fasta-c${EXE} $MODE_ARGS | tr -d '\r' > ${output}/fasta.stdout
# ./fasta-c $(NORM_OPTS) | tr -d '\r' > $@
# k-nucleotide.slowstdin : fasta-c
-# ./fasta-c $(SLOW_OPTS) | tr -d '\r' > $@
\ No newline at end of file
+# ./fasta-c $(SLOW_OPTS) | tr -d '\r' > $@
diff --git a/shootout/k-nucleotide/boot.sh b/shootout/k-nucleotide/boot.sh
index 6e9a4c1c..c5736033 100755
--- a/shootout/k-nucleotide/boot.sh
+++ b/shootout/k-nucleotide/boot.sh
@@ -13,7 +13,7 @@ HC=${3:-ghc}
mode=${4:-norm}
EXE=""
-if [[ $(shell uname -s | grep -c 'MSYS\|MINGW') -eq 1 ]]
+if [[ $(uname -s | grep -c 'MSYS\|MINGW') -eq 1 ]]
then
EXE=".exe"
fi
@@ -49,4 +49,4 @@ ${output}/fasta-c${EXE} $MODE_ARGS | tr -d '\r' > ${output}/${INPUT_FILE}
# ./fasta-c $(NORM_OPTS) | tr -d '\r' > $@
# k-nucleotide.slowstdin : fasta-c
-# ./fasta-c $(SLOW_OPTS) | tr -d '\r' > $@
\ No newline at end of file
+# ./fasta-c $(SLOW_OPTS) | tr -d '\r' > $@
diff --git a/shootout/reverse-complement/boot.sh b/shootout/reverse-complement/boot.sh
index de7b3a64..9b6fd8ea 100755
--- a/shootout/reverse-complement/boot.sh
+++ b/shootout/reverse-complement/boot.sh
@@ -13,7 +13,7 @@ HC=${3:-ghc}
mode=${4:-norm}
EXE=""
-if [[ $(shell uname -s | grep -c 'MSYS\|MINGW') -eq 1 ]]
+if [[ $(uname -s | grep -c 'MSYS\|MINGW') -eq 1 ]]
then
EXE=".exe"
fi
diff --git a/spectral/awards/boot.sh b/spectral/awards/boot.sh
index f7f1c4e9..038f1062 100755
--- a/spectral/awards/boot.sh
+++ b/spectral/awards/boot.sh
@@ -13,7 +13,7 @@ HC=${3:-ghc}
mode=${4:-norm}
EXE=""
-if [[ $(shell uname -s | grep -c 'MSYS\|MINGW') -eq 1 ]]
+if [[ $(uname -s | grep -c 'MSYS\|MINGW') -eq 1 ]]
then
EXE=".exe"
fi
diff --git a/spectral/banner/boot.sh b/spectral/banner/boot.sh
index a7480dad..bee76891 100755
--- a/spectral/banner/boot.sh
+++ b/spectral/banner/boot.sh
@@ -13,7 +13,7 @@ HC=${3:-ghc}
mode=${4:-norm}
EXE=""
-if [[ $(shell uname -s | grep -c 'MSYS\|MINGW') -eq 1 ]]
+if [[ $(uname -s | grep -c 'MSYS\|MINGW') -eq 1 ]]
then
EXE=".exe"
fi
--
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