Make: Get rid of `BUILD_.*_INCLUDE_DIRS`

First, we improve some of the rules around -I include dirs, and CPP
opts.

Then, we just specify the RTS's include dirs normally (locally per the
package and in the package conf), and then everything should work
normally.

The primops.txt.pp rule needs no extra include dirs at all, as it no
longer bakes in a target platfom.

Reverts some of the extra stage arguments I added in
05419e55, as they are no longer needed.